ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR169_1
source: miRBase, original name: ptc-MIR169y (MI0002275)
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCATGGATGAATTGCCTG miRNA* GGCAGTCATCAGCTTGGCTAACT mismatches: 2 bulges: 4 |
pre-miRNA
TCTTGTTTAGTAGCCATGGATGAATTGCCTGCTTCCAAAATGAGGTGTCAAGCCGAGATAAACATACAAGTTTGATCCCTCATTGGGGTTCCCAGGCAGT
CATCAGCTTGGCTAACTTGACAG
dot-bracket secondary structure
...((((.((((((((..(((((.(((((((...((..(((((((..((((((................))))))..)))))))..))....))))))))
))))....))))).))).)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
TCTTGTTTAGTAGCCATGGATGAATTGCCTGCTTCCAAAATGAGGTGTCAAGCCGAGATAAACATACAAGTTTGATCCCTCATTGGGGTTCCCAGGCAGT
CATCAGCTTGGCTAACTTGACAG
dot-bracket secondary structure
...((((.((((((((..(((((.(((((((...((..(((((((..((((((................))))))..)))))))..))....))))))))
))))....))))).))).)))).
SIMILARITIES| miRBase bna-MIR169l: 0.00002 PMRD ptc-miR169y: 1e-65 microPC no hits | UniProt no hits RFAM MIR169_5: 2e-64 |
Identical with: ptc-miR169y from PMRD (MNEST051682) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
