ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR171
source: miRBase, original name: sbi-MIR171f (MI0001854)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGAGCCGAACCAATATCACT miRNA* GTGATGTTGTTTCGGCTCATGC mismatches: 1 bulges: 1 |
pre-miRNA
TGAGAGAATAAGACGACATGGCGTGATGTTGTTTCGGCTCATGCATATCCTTCTTGAGTGTATCATCAGGAAAGAGGCGATGAGCCGAACCAATATCACT
CATGTATTCTTCATTCATA
dot-bracket secondary structure
.....((((((((..((((((.(((((((((.((((((((((((...((.(((((((........))))))).)).)).)))))))))).))))))))))
)))))..)))).))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
TGAGAGAATAAGACGACATGGCGTGATGTTGTTTCGGCTCATGCATATCCTTCTTGAGTGTATCATCAGGAAAGAGGCGATGAGCCGAACCAATATCACT
CATGTATTCTTCATTCATA
dot-bracket secondary structure
.....((((((((..((((((.(((((((((.((((((((((((...((.(((((((........))))))).)).)).)))))))))).))))))))))
)))))..)))).))))...
SIMILARITIES| miRBase osa-MIR171h: 0.00000000000003 PMRD sbi-miR171f: 3e-63 microPC miR171: 0.00009 | UniProt no hits RFAM MIR171_2: 3e-57 |
Identical with: sbi-miR171f from PMRD (MNEST054457) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
