ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR171
source: miRBase, original name: sbi-MIR171i (MI0010882)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGCTCGGCTCACTCAGA mismatches: 3 bulges: 0 |
pre-miRNA
GTGTTGGCTCGGCTCACTCAGAAGCTGAAATAGTAGTGATGAATCTAAATGGTAGCTATGGCGTTTCTGATTGAGCCGTGCCAATATCTT
dot-bracket secondary structure
((((((((.(((((((.((((((((.(..(((((..(.((........)).)..)))))..))))))))).))))))).))))))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
GTGTTGGCTCGGCTCACTCAGAAGCTGAAATAGTAGTGATGAATCTAAATGGTAGCTATGGCGTTTCTGATTGAGCCGTGCCAATATCTT
dot-bracket secondary structure
((((((((.(((((((.((((((((.(..(((((..(.((........)).)..)))))..))))))))).))))))).))))))))...
SIMILARITIES| miRBase zma-MIR171d: 0.0000000003 PMRD sbi-miR171i: 4e-46 microPC miR171: 0.00000002 | UniProt no hits RFAM MIR171_1: 8e-45 |
Identical with: sbi-miR171i from PMRD (MNEST054460) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
