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Species belonging to selected taxon:

Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST042563
species: Sorghum bicolor
miRNA family: MIR319
source: miRBase, original name: sbi-MIR319 (MI0001573)

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGACTGAAGGGTGCTCCC

miRNA*
 AGAGCGTCCTTCAGTCCACTC

mismatches: 4
bulges: 1
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pre-miRNA
 CTGCCGCCATGGTTGTGATATGGCCGGATGGAAGAGAGCGTCCTTCAGTCCACTCAGGGGCGGTGCTAGGGTCGAATTAGCTGCCGACTCATTCACCCAC
ATGCCAAGCAAACGGCCATGGAAACGAGCTAGCTTTGCAGATGAGTGAATGAAGCGGGAGGTAAAAGCTTCGATCTCGCACCATCTTTGCTTGGACTGAA
GGGTGCTCCCTCCTCCCCTCCTTAATTGTTTACTTTACCCATGGCGCAG

dot-bracket secondary structure
((((.(((((((..((((...((..(((.(((.(.((((..(((((((((((..(((((..(((((..(((((((((((.((.(((..((((((((.((.
.(((.((((....(((..((....)).))).)))).)))..)).))))))))..))).)).)))....)))))))).)))))..)))))..)))))))))
))..))))).))))))...))........)))).....)))))))))))


SIMILARITIES
miRBase zma-MIR319b: 1e-92

PMRD sbi-miR319: 2e-140

microPC miR319: 2e-41		UniProt no hits

RFAM MIR159: 2e-109

Identical with: sbi-miR319 from PMRD (MNEST054468)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"



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