ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR393
source: miRBase, original name: sbi-MIR393 (MI0001530)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCAAAGGGATCGCATTGATC miRNA* TCATGCGATCCTTTTGGAGG mismatches: 0 bulges: 1 |
pre-miRNA
ACAATGCCTGGAGGAAGCATCCAAAGGGATCGCATTGATCCGTCACTCCTTCCATTCTATCATGGGTGGTCGTCGTCTACAAGGACTTCGTTCCCGACGG
ATCATGCGATCCTTTTGGAGGCTTCCTCTAGACATTACT
dot-bracket secondary structure
..((((.(((((((((((.((((((((((((((((.((((((((.......((((((......)))))).((..((((....))))..)).....)))))
))))))))))))))))))).))))))))))).))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
ACAATGCCTGGAGGAAGCATCCAAAGGGATCGCATTGATCCGTCACTCCTTCCATTCTATCATGGGTGGTCGTCGTCTACAAGGACTTCGTTCCCGACGG
ATCATGCGATCCTTTTGGAGGCTTCCTCTAGACATTACT
dot-bracket secondary structure
..((((.(((((((((((.((((((((((((((((.((((((((.......((((((......)))))).((..((((....))))..)).....)))))
))))))))))))))))))).))))))))))).))))...
SIMILARITIES| miRBase bdi-MIR393a: 1e-16 PMRD sbi-miR393: 1e-47 microPC miR393: 0.000002 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
