ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR394
source: miRBase, original name: sbi-MIR394a (MI0001531)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGCATTCTGTCCACCTCC miRNA* AGGTGGACATACTGCCAATG mismatches: 2 bulges: 0 |
pre-miRNA
CTTTACATACTGAGAGTTCCTTGGCATTCTGTCCACCTCCTTGCCCATCGTCAGATATATGTGTTGCTTTTGGAGGTGGACATACTGCCAATGGAGCTGT
GTAGGCCTCT
dot-bracket secondary structure
.........((((.((((((((((((.(.(((((((((((..((....((.((......))))..))....))))))))))).).)))))).)))))).)
.)))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
CTTTACATACTGAGAGTTCCTTGGCATTCTGTCCACCTCCTTGCCCATCGTCAGATATATGTGTTGCTTTTGGAGGTGGACATACTGCCAATGGAGCTGT
GTAGGCCTCT
dot-bracket secondary structure
.........((((.((((((((((((.(.(((((((((((..((....((.((......))))..))....))))))))))).).)))))).)))))).)
.)))......
SIMILARITIES| miRBase zma-MIR394a: 0.000000000000006 PMRD sbi-miR394a: 6e-58 microPC miR394: 0.0003 | UniProt no hits RFAM MIR394: 1e-50 |
Identical with: sbi-miR394a from PMRD (MNEST054471) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
