ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR396
source: miRBase, original name: sbi-MIR396b (MI0001538)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTG miRNA* GTTCAATAAAGCTGTGGGAAA mismatches: 1 bulges: 0 |
pre-miRNA
AGATGGCCTTCTTTGTGATCTTCCACAGCTTTCTTGAACTGCATCTCTAAGAGGAGCAGCTTGAACTCTCTACCTGCATGAGCAGGTGCAGTTCAATAAA
GCTGTGGGAAACTGCAGAGAGAGGCCAA
dot-bracket secondary structure
...(((((((((((((..(.((((((((((((.(((((((((.......((((...(.....)..))))..((((((....))))))))))))))).)))
))))))))).)..))))))).)))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
AGATGGCCTTCTTTGTGATCTTCCACAGCTTTCTTGAACTGCATCTCTAAGAGGAGCAGCTTGAACTCTCTACCTGCATGAGCAGGTGCAGTTCAATAAA
GCTGTGGGAAACTGCAGAGAGAGGCCAA
dot-bracket secondary structure
...(((((((((((((..(.((((((((((((.(((((((((.......((((...(.....)..))))..((((((....))))))))))))))).)))
))))))))).)..))))))).)))))).
SIMILARITIES| miRBase sof-MIR396: 4e-53 PMRD sbi-miR396b: 1e-68 microPC miR396: 8e-30 | UniProt no hits RFAM MIR396: 1e-56 |
Identical with: sbi-miR396b from PMRD (MNEST054486) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
