ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR396
source: miRBase, original name: sbi-MIR396c (MI0001540)
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTT miRNA* GGTCAAGAAAGCTGTGGGAAG mismatches: 1 bulges: 0 |
pre-miRNA
TTCAAGTCCATGCCATGCCTTTCCACAGCTTTCTTGAACTTCTCCTCCTCCTCCTCTCTCTTAGAAGGGTAGCTTTGAACATCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCCAAAGAAGGTCAAGAAAGCTGTGGGAAGAAATGACATAACAAGGA
dot-bracket secondary structure
.....((..(((.(((..(((((((((((((((((((.(((((.......((((..((.....))..)).))....((.....))...............
....................))))).)))))))))))))))))))..))).))).)).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
TTCAAGTCCATGCCATGCCTTTCCACAGCTTTCTTGAACTTCTCCTCCTCCTCCTCTCTCTTAGAAGGGTAGCTTTGAACATCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCCAAAGAAGGTCAAGAAAGCTGTGGGAAGAAATGACATAACAAGGA
dot-bracket secondary structure
.....((..(((.(((..(((((((((((((((((((.(((((.......((((..((.....))..)).))....((.....))...............
....................))))).)))))))))))))))))))..))).))).)).....
SIMILARITIES| miRBase bdi-MIR396e: 0.00000000003 PMRD sbi-miR396c: 6e-19 microPC miR396: 0.0005 | UniProt no hits RFAM MIR396: 0.0000000000007 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
