ABOUT THIS RECORDspecies: Helianthus exilis
source: microPC, original name: miR171
Taxonomy by NCBI:
Helianthus exilis Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGCCGTGCCAATATCACG miRNA* AGATGTTGGTTCGGTTCAAT mismatches: 2 bulges: 0 |
pre-miRNA
CGAGATGTTGGTTCGGTTCAATAAGAACTCAATGTTCAAATAGTGCATTGAACGTTGCTTTTTGATTGAGCCGTGCCAATATCACG
dot-bracket secondary structure
((.(((((((((.(((((((((.((((..((((((((((........))))))))))..)))).))))))))).))))))))).))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CGAGATGTTGGTTCGGTTCAATAAGAACTCAATGTTCAAATAGTGCATTGAACGTTGCTTTTTGATTGAGCCGTGCCAATATCACG
dot-bracket secondary structure
((.(((((((((.(((((((((.((((..((((((((((........))))))))))..)))).))))))))).))))))))).))
SIMILARITIES| miRBase rco-MIR171a: 0.00000000007 PMRD vvi-miR171c: 0.000000004 microPC miR171: 1e-43 | UniProt no hits RFAM MIR171_1: 0.000000001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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