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Species belonging to selected taxon:

Coffea canephora, Catharanthus roseus



ABOUT THIS RECORD

ID: MNEST045064
species: Coffea canephora
miRNA family: MIR396
source: microPC, original name: miR396

Taxonomy by NCBI:
Coffea canephora Coffea Coffeeae Ixoroideae Rubiaceae Gentianales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCCACAGCTTTCTTGAACT

miRNA*
 TTCAATAAAGCTGTGGGA

mismatches: 1
bulges: 0
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pre-miRNA
 TTCCACAGCTTTCTTGAACTGCATCTGGCTTTATCACTCCATGAATATGATTCTTGCAAGACTTCGGTGGAGGTGACGCGATGATGGCGGTTCAATAAAG
CTGTGGGA

dot-bracket secondary structure
((((((((((((.(((((((((((((.((.((((..((((((.....(((.(((....)))..))))))))))))).)).).))).))))))))).))))
))))))))


SIMILARITIES
miRBase bdi-MIR396d: 0.00000002

PMRD zma-miR396l: 0.00000008

microPC miR396: 1e-56		UniProt no hits

RFAM MIR396: 0.000002

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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