miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST045321
species: Nicotiana benthamiana
source: microPC, original name: miR169

Taxonomy by NCBI:
Nicotiana benthamiana Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGCCAGGGATGACTTGCCG

miRNA*
 GCAAGTTGTCCCTGGCT

mismatches: 2
bulges: 0
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pre-miRNA
 AGCCAGGGATGACTTGCCGAGTATTTCTTTGTTTTAATTGCCTGTGGTTTACCAGGGATTTTATATCGGCAAGTTGTCCCTGGCT

dot-bracket secondary structure
(((((((((..((((((((((((..((((((....(((((....)))))...))))))...))).)))))))))..)))))))))


SIMILARITIES
miRBase no hits

PMRD no hits

microPC miR169: 4e-43		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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