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Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii



ABOUT THIS RECORD

ID: MNEST045647
species: Gossypium hirsutum
source: microPC, original name: miR390

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGCTCAGGAGGGATAGCGCC

miRNA*
 CGCTATCCATCCTGAGTT

mismatches: 2
bulges: 0
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pre-miRNA
 TAGCTCAGGAGGGATAGCGCCATGGATGATCCATCTTTCAAGCTTTCATGCATGTATGTTATTTGATCCTCATATAGCGCTATCCATCCTGAGTT

dot-bracket secondary structure
)(((((((((.(((((((((.(((((.((((...(...((.((......)).))...)......)))).)).))).))))))))).)))))))))


SIMILARITIES
miRBase ghr-MIR390c: 2.0E-48

PMRD ghr-miR390c: 2.0E-48

microPC miR390: 2.0E-48		UniProt no hits

RFAM 0MIR390: 5.0E-9

Identical with: ghr-miR390c from PMRD (MNEST048500), ghr-MIR390a from miRBase , ghr-MIR390c from miRBase , ghr-MIR390b from miRBase , ghr-miR390a from PMRD , ghr-miR390b from PMRD

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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