ABOUT THIS RECORDspecies: Centaurea solstitialis
source: microPC, original name: miR156
Taxonomy by NCBI:
Centaurea solstitialis Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GACAGAAGAGAGTGAGCA miRNA* CCCACTTCTCTTGCTGTC mismatches: 1 bulges: 2 |
pre-miRNA
GACAGAAGAGAGTGAGCATATGCAAAGCAATTGTATAGAAAAACTATACATTTGTTGGAATTATGCGTGTGCCCACTTCTCTTGCTGTC
dot-bracket secondary structure
((((((((((((((.(((((((((.(((((.(((((((.....))))))).))))).......))))))))).))).)))))).)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GACAGAAGAGAGTGAGCATATGCAAAGCAATTGTATAGAAAAACTATACATTTGTTGGAATTATGCGTGTGCCCACTTCTCTTGCTGTC
dot-bracket secondary structure
((((((((((((((.(((((((((.(((((.(((((((.....))))))).))))).......))))))))).))).)))))).)))))
SIMILARITIES| miRBase osa-MIR156l: 0.00007 PMRD osa-miR156l: 0.00007 microPC miR156: 2e-45 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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