miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST045816
species: Manihot esculenta
source: microPC, original name: miR159

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGATTGAAGGGAGCTCT

miRNA*
 AGCTCCTTAAAGTCCAATA

mismatches: 2
bulges: 0
View larger
pre-miRNA
 GGAGCTCCTTAAAGTCCAATAGAGGATCTTGCAGGGTAGATTGAGCTGCTGAGCTATGGATACCACAGCCCTATCCCATAATAAAAGGGAGTTCTTTTTT
TCAAGTCTTCTTGGATAGGCTTGTGGCTTGCATATCTCTGGAGCTTCATTACCTTATTATGTTAGATCCTTGTTTGGATTGAAGGGAGCTCT

dot-bracket secondary structure
((((((((((..(((((((..((((((((.(((((((((...(((((.(.(((.((((.(..((((((.(((((((.........((((((..(((....
..))).))))))))))))).))))))..).)))).))).).)))))..)))))).....))).))))))))..)))))))..))))))))))


SIMILARITIES
miRBase rco-MIR159: 1e-26

PMRD vvi-miR159c: 3e-21

microPC miR159: 5e-94		UniProt no hits

RFAM MIR159: 2e-25

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record




Liczniki na strone;