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Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST045845
species: Coffea canephora
source: microPC, original name: miR396

Taxonomy by NCBI:
Coffea canephora Coffea Coffeeae Ixoroideae Rubiaceae Gentianales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCCACATCTTTCTTGAACT

miRNA*
 TTCAATAAAGCTGTGGGA

mismatches: 2
bulges: 0
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pre-miRNA
 TTCCACATCTTTCTTGAACTGCATCTGGCTTTATCACTCCATGAATATGATTCTTGCGAGACTTCGGAGGAGGTGACGCGATGATGGCGGTTCAATAAAG
CTGTGGGA

dot-bracket secondary structure
(((((((.((((.(((((((((((((.((.(((((.(((((.((((...)))).)).))).(....)....))))).)).).))).))))))))).))))
.)))))))


SIMILARITIES
miRBase bdi-MIR396d: 0.000005

PMRD zma-miR396l: 0.00002

microPC miR396: 1e-56		UniProt no hits

RFAM MIR396: 0.0004

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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