ABOUT THIS RECORDspecies: Cycas rumphii
miRNA family: MIR167
source: microPC, original name: miR167
Taxonomy by NCBI:
Cycas rumphii Cycas Cycadaceae Cycadales Cycadopsida Cycadophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GATCATGTGGCAGTCTCA mismatches: 3 bulges: 1 |
pre-miRNA
TGAAGCTGCCAGCATGATCTGGTTAATATTGCTCTCGCCAGTTGCTTTTGGGTACCAGATCATGTGGCAGTCTCA
dot-bracket secondary structure
.((..((((((.(((((((((((...((..((...(....)..))...))...)))))))))))))))))..)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGAAGCTGCCAGCATGATCTGGTTAATATTGCTCTCGCCAGTTGCTTTTGGGTACCAGATCATGTGGCAGTCTCA
dot-bracket secondary structure
.((..((((((.(((((((((((...((..((...(....)..))...))...)))))))))))))))))..)).
SIMILARITIES| miRBase zma-MIR167g: 0.0000002 PMRD zma-miR167g: 0.0000002 microPC miR167: 3e-37 | UniProt no hits RFAM MIR167_1: 0.000004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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