ABOUT THIS RECORDspecies: Eucalyptus globulus
source: microPC, original name: miR399
Taxonomy by NCBI:
Eucalyptus globulus Eucalyptus Myrtaceae Myrtales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAGTTGCCC miRNA* GCTTCTCTACTTTGGCAAC mismatches: 3 bulges: 0 |
pre-miRNA
GGGCTTCTCTACTTTGGCAACACATGTCAATGATGACGACGACGGAGAAGTCGAACGGATGCCGTCCAGTCATCGACGACTTGCCAAAGGAGAGTTGCCC
dot-bracket secondary structure
((((..((((.(((((((((.....(((..(((((((...(((((....(((.....))).)))))..)))))))..)))))))))))).))))..))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
GGGCTTCTCTACTTTGGCAACACATGTCAATGATGACGACGACGGAGAAGTCGAACGGATGCCGTCCAGTCATCGACGACTTGCCAAAGGAGAGTTGCCC
dot-bracket secondary structure
((((..((((.(((((((((.....(((..(((((((...(((((....(((.....))).)))))..)))))))..)))))))))))).))))..))))
SIMILARITIES| miRBase vvi-MIR399b: 0.000005 PMRD vvi-miR399b: 0.000005 microPC miR399: 5e-52 | UniProt no hits RFAM mir-399: 0.0003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
