ABOUT THIS RECORDspecies: Nicotiana langsdorffii x Nicotiana sanderae
source: microPC, original name: miR156
Taxonomy by NCBI:
Nicotiana langsdorffii x Nicotiana sanderae Nicotiana Nicotianeae Nicotianoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGAAGAGAGTGAGCAC miRNA* GCTCACTTCTCTTTCTG mismatches: 0 bulges: 2 |
pre-miRNA
CAGAAGAGAGTGAGCACACGCACACAATTGTATACAGTGTATACTTTTGTGTTTATATTATTTGCGTGTGCTCACTTCTCTTTCTG
dot-bracket secondary structure
(((((((((((((((((((((((((((..((((((...))))))..))))))...........)))))))))))).)))).)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CAGAAGAGAGTGAGCACACGCACACAATTGTATACAGTGTATACTTTTGTGTTTATATTATTTGCGTGTGCTCACTTCTCTTTCTG
dot-bracket secondary structure
(((((((((((((((((((((((((((..((((((...))))))..))))))...........)))))))))))).)))).)))))
SIMILARITIES| miRBase tcc-MIR156c: 0.0000003 PMRD stu-miR156a: 0.000004 microPC miR156: 1e-43 | UniProt no hits RFAM mir-156: 0.000005 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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