miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus

ABOUT THIS RECORD

ID: MNEST046090
species: Centaurea solstitialis
miRNA family: MIR162
source: microPC, original name: miR162

Taxonomy by NCBI:
Centaurea solstitialis Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TCGATAAACCTCTGCATCCA

miRNA*
GAGTCAGCGGTTTATCGATC

mismatches: 4
bulges: 0

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pre-miRNA
TGGAGTCAGCGGTTTATCGATCAGTTCCTTTTAACAAACGCATGAACAAGAGAGAGCGAGCGTAAAAGAGGAATCGATCGATAAACCTCTGCATCCA

dot-bracket secondary structure
.(((..(((.((((((((((((.(((((((((.....((((.((..(......)..)).))))..))))))))).)))))))))))).)))..))).

UniProt no hits

RFAM MIR162_2: 0.00000009

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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