ABOUT THIS RECORDspecies: Lactuca perennis
miRNA family: MIR398
source: microPC, original name: miR398
Taxonomy by NCBI:
Lactuca perennis Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCT miRNA* GAGTGACACTAAGAACACATA mismatches: 2 bulges: 1 |
pre-miRNA
AGGAGTGACACTAAGAACACATATGGTTGAATTGCTATCTCCAGTGTATATTCATATGTTGTCAGTACAAATTTTTGATGCACATACAGTTGTTTGTGAG
ACATTGTCGACCATCCATTTGTGTTCTCAGGTCACCCCT
dot-bracket secondary structure
(((.(((((.((.((((((((.((((((((..((...((((..((((((.........((((....)))).......))))))..((((....)))))))
)))...)))))))).....)))))))).))))))).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGGAGTGACACTAAGAACACATATGGTTGAATTGCTATCTCCAGTGTATATTCATATGTTGTCAGTACAAATTTTTGATGCACATACAGTTGTTTGTGAG
ACATTGTCGACCATCCATTTGTGTTCTCAGGTCACCCCT
dot-bracket secondary structure
(((.(((((.((.((((((((.((((((((..((...((((..((((((.........((((....)))).......))))))..((((....)))))))
)))...)))))))).....)))))))).))))))).)))
SIMILARITIES| miRBase aqc-MIR398a: 0.000002 PMRD aqc-miR398a: 0.000002 microPC miR398: 4e-75 | UniProt no hits RFAM MIR398: 0.0005 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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