miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST046703
species: Helianthus petiolaris
miRNA family: MIR398
source: microPC, original name: miR398

Taxonomy by NCBI:
Helianthus petiolaris Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCACCCCT

miRNA*
 GAGTGACACTAAGAACACATA

mismatches: 2
bulges: 1
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pre-miRNA
 AGGAGTGACACTAAGAACACATATGGTGGAATTGCTCTTTTACATATATAAAAGGTGCAATGATATGTTGTACTGTACAAATATCCAATGCACATACTTT
TGTTTGTAAAGTCTTGTCGGCAATCCGTATGTGTTCTCAGGTCACCCCT

dot-bracket secondary structure
(((.(((((.((.(((((((((((((....((((((.(((((((...((((((((((((..(((((.(((((...))))))))))...)))))...))))
))).))))))).......))))))))))))))))))).))))))).)))


SIMILARITIES
miRBase ath-MIR398c: 0.0001

PMRD ath-miR398c: 0.0001

microPC miR398: 5e-81		UniProt no hits

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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Liczniki na strone;