ABOUT THIS RECORDspecies: Helianthus petiolaris
miRNA family: MIR398
source: microPC, original name: miR398
Taxonomy by NCBI:
Helianthus petiolaris Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCT miRNA* GAGTGACACTAAGAACACATA mismatches: 2 bulges: 1 |
pre-miRNA
AGGAGTGACACTAAGAACACATATGGTGGAATTGCTCTTTTACATATATAAAAGGTGCAATGATATGTTGTACTGTACAAATATCCAATGCACATACTTT
TGTTTGTAAAGTCTTGTCGGCAATCCGTATGTGTTCTCAGGTCACCCCT
dot-bracket secondary structure
(((.(((((.((.(((((((((((((....((((((.(((((((...((((((((((((..(((((.(((((...))))))))))...)))))...))))
))).))))))).......))))))))))))))))))).))))))).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGGAGTGACACTAAGAACACATATGGTGGAATTGCTCTTTTACATATATAAAAGGTGCAATGATATGTTGTACTGTACAAATATCCAATGCACATACTTT
TGTTTGTAAAGTCTTGTCGGCAATCCGTATGTGTTCTCAGGTCACCCCT
dot-bracket secondary structure
(((.(((((.((.(((((((((((((....((((((.(((((((...((((((((((((..(((((.(((((...))))))))))...)))))...))))
))).))))))).......))))))))))))))))))).))))))).)))
SIMILARITIES| miRBase ath-MIR398c: 0.0001 PMRD ath-miR398c: 0.0001 microPC miR398: 5e-81 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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