miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil

ABOUT THIS RECORD

ID: MNEST046717
species: Ipomoea batatas
miRNA family: MIR168
source: microPC, original name: miR168

Taxonomy by NCBI:
Ipomoea batatas Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TCGCTTGGTGCAGGTCGGGAA

miRNA*
CCCGCCTTGCATCAACTGA

mismatches: 3
bulges: 0

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pre-miRNA
TCGCTTGGTGCAGGTCGGGAACTGCCGCCGCCGGCTGAGCGGAGACGGTTGCGTCGTCGTCTCCGGCGAATTTAGCTCCCGCCTTGCATCAACTGA

dot-bracket secondary structure
(((.((((((((((.(((((.(((....((((((..((.((..((((....))))..)))).))))))....))).))))).)))))))))).)))

UniProt no hits

RFAM MIR168: 0.00002

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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