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Species belonging to selected taxon:

Ipomoea batatas, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Petunia axillaris subsp. axillaris, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST048668
species: Ipomoea batatas
source: PMRD, original name: iba-miR157

Taxonomy by NCBI:
Ipomoea batatas Ipomoea Ipomoeeae Convolvulaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGACAGAAGATAGAGAGCAT

miRNA*
 CGCTCATTGTGACCTGCCAATCGCCTCCGGCAACTCCTCTTAGCTTCATCAAACTGGGCTAATT

mismatches: 5
bulges: 84
View larger
pre-miRNA
 TTGACAGAAGATAGAGAGCATGCTAGAAATTACATTGATAAGCTATGTGGTTCAGAGACCAATCTTCTTATGAGTTCCAATAAGGAGTTGGTTTGTCCCC
CCACTGGTATTATGTCTTCAGGTTGACCCTTCACCATGAGAATCATATGTAATTCTCCGGCGGCGCTCATTGTGACCTGCCAATCGCCTCCGGCAACTCC
TCTTAGCTTCATCAAACTGGGCTAATTCATGAAACCTGCTGCATTGCTGACAGAAGCGCTGTTGAACTCCATTTATAAGTACT

dot-bracket secondary structure
(..((((.((.(((.((((.(((..((((((((((((((..((((.((((...(.(((((((.((((((((........))))))))))))))).)....
))))))))........(((((((.((....))))).)))).)))).)))))))).))..)))..)))).(..(((..((((..........)))).....
..((((((.((......)))))))).)))..)...))))).....(((......))).))))..)..................


SIMILARITIES
miRBase vvi-MIR156i: 0.001

PMRD ini-miR157b: 2e-91

microPC miR157: 0.001		UniProt sp|Q9S758|SPL5_ARATH: 4e-19

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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