miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST048813
species:
Oryza sativa
miRNA family:
MIR156
source:
PMRD, original name:
osa-miR156m
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCAC
miRNA*
GCTCGCTCCTCTTTCTGTCA
mismatches:
1
bulges:
2
View larger
pre-miRNA
TGACAGAAGAGAGTGAGCAC
ACGGCGCGGCGGCTAGCCATCGGCGGGATGCCTGCCCCCGCCGCGT
GCTCGCTCCTCTTTCTGTCA
dot-bracket secondary structure
.(((((((((((((((((((
.(((((.((.(((.((.((((.....)))).)))))))))))).))
))))))).))).))))))).
SIMILARITIES
miRBase
osa-MIR156j
:
1e-43
PMRD
osa-miR156j
:
1e-43
microPC
miR156
:
4e-40
UniProt
no hits
RFAM
mir-156: 2e-42
Identical with:
osa-miR156j
from PMRD (
MNEST048810
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
download this record
deep sequencing data evidence