miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cycas rumphii, Zamia vazquezii



ABOUT THIS RECORD

ID: MNEST000508
species: Cycas rumphii
miRNA family: miR166d
source: miRNEST

Taxonomy by NCBI:
Cycas rumphii Cycas Cycadaceae Cycadales Cycadopsida Cycadophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGAATGTTGTCTGGCTCGACT

miRNA*
 TCGGACCAGGCTTCATTCCCC

mismatches: 4
bulges: 0
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pre-miRNA
 TCAATGTTGAGGGGAATGTTGTCTGGCTCGACTCGATCCACAGACTTTTGGTTGGAGGGTGCTGTCGGACCAGGCTTCATTCCCCCCAATTTGA

dot-bracket secondary structure
((((.((((.((((((((..((((((.(((((.((.((((...(((...)))))))...))..))))).))))))..)))))))).))))))))


SIMILARITIES
miRBase vvi-MIR166e: 0.000000001

PMRD vvi-miR166e: 0.000000001

microPC miR166: 4e-37		UniProt no hits

RFAM mir-166: 0.00000008		most similar mature miRNAs

Identical with: miR166 from microPC (MNEST045008)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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