ABOUT THIS RECORDspecies: Prunus armeniaca
source: PMRD, original name: par-miR156
Taxonomy by NCBI:
Prunus armeniaca Prunus Amygdaleae Spiraeoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGAGAGCAC miRNA* GCTCTGGGGTTTTGTTC mismatches: 6 bulges: 1 |
pre-miRNA
TGACAGAAGAGAGAGAGCACGCTAGGCTAGAGGTACAAAAGAGGCATTTTATATGAGAGAGATATGTAGCAATCCTCGCTTTTTAATAACCATGCCTGCT
CTGGGGTTTTGTTC
dot-bracket secondary structure
.(((((((.....((((((.((..((..((((((......((((.((((((((((.......))))))).)))))))))))))......))..)).))))
))....))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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TGACAGAAGAGAGAGAGCACGCTAGGCTAGAGGTACAAAAGAGGCATTTTATATGAGAGAGATATGTAGCAATCCTCGCTTTTTAATAACCATGCCTGCT
CTGGGGTTTTGTTC
dot-bracket secondary structure
.(((((((.....((((((.((..((..((((((......((((.((((((((((.......))))))).)))))))))))))......))..)).))))
))....))))))).
SIMILARITIES| miRBase zma-MIR156j: 0.0003 PMRD par-miR157: 3e-60 microPC miR157: 0.0003 | UniProt no hits RFAM no hits |
Identical with: par-miR157 from PMRD (MNEST051321) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
download this record
