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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST052444
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf10622-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TACCGACGGAATCATTCCGTCGGTGAT

miRNA*
 TACCGACGGAACTATTCCGTCGGTAAT

mismatches: 2
bulges: 0
View larger
pre-miRNA
 ACGGAATTACCGACGGAACTATTCCGTCGGTAATTTATACCGACGGACATAATTCCGTCTCAAAATCTGTCGGTATATACCGACGGAATCATTCCGTCGG
TGATGTCGT

dot-bracket secondary structure
(((..(((((((((((((..((((((((((((...((((((((((((..................))))))))))))))))))))))))..)))))))))
))))..)))


SIMILARITIES
miRBase no hits

PMRD ptc-miRf11277-akr: 3e-57

microPC no hits		UniProt no hits

RFAM no hits

Identical with: ptc-miRf11277-akr from PMRD (MNEST053099)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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