miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST000526
species: Cynodon dactylon
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Cynodon dactylon Cynodon Eleusininae Cynodonteae Chloridoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGTGAGCACA

miRNA*
 TGCTCGCTCCTCTTTCTGTCAGC

mismatches: 2
bulges: 2
View larger
pre-miRNA
 CTTATACGGCCCTGGAGAGATTGACAGAAGAGAGTGAGCACACGGGGCGGCGGTCGGCACTGGACGTGTGTCGTCCCCGCCGCGTGCTCGCTCCTCTTTC
TGTCAGCCTCTCTCTTGTCCAAGGC

dot-bracket secondary structure
.......(((...(((((((((((((((((.((((((((((.....(((((((.((((((.......))))))...)))))))))))))))))...))))
))))))..))))))).)))......


SIMILARITIES
miRBase sbi-MIR156e: 8e-27

PMRD sbi-miR156e: 8e-27

microPC miR156: 0.000000006		UniProt no hits

RFAM mir-156: 0.00000000000003		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;