ABOUT THIS RECORDspecies: Bos taurus
miRNA family: miR-2340
source: miRNEST
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGACTTCCCTGGTGGTCTAGT miRNA* TGGGCCAGGGGATGTTCTT mismatches: 1 bulges: 2 |
pre-miRNA
GATGATGAGTTTCAGGAGGCACTGGGCCAGGGGATGTTCTTCAGGCTAAGGCATTGCCAAATGTCAGGCTAAATGAACCACATCATTCCCCAGAGATCTT
GGGGAAATTGTTTTTTTCTATAGACAATAGACGGGAGGACTTCCCTGGTGGTCTAGTGGTTGAGACTCCGGGCTGC
dot-bracket secondary structure
......(((((((((....(((((((((((((((.(((((((.((((..((((((....)))))).))))..((((......))))(((((((.....))
))))).(((((((........))))))).....))))))).)))))..)))))))))).)))))))))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GATGATGAGTTTCAGGAGGCACTGGGCCAGGGGATGTTCTTCAGGCTAAGGCATTGCCAAATGTCAGGCTAAATGAACCACATCATTCCCCAGAGATCTT
GGGGAAATTGTTTTTTTCTATAGACAATAGACGGGAGGACTTCCCTGGTGGTCTAGTGGTTGAGACTCCGGGCTGC
dot-bracket secondary structure
......(((((((((....(((((((((((((((.(((((((.((((..((((((....)))))).))))..((((......))))(((((((.....))
))))).(((((((........))))))).....))))))).)))))..)))))))))).)))))))))........
SIMILARITIES| miRBase bta-mir-2340: 0.0005 PMRD no hits microPC no hits | UniProt no hits RFAM tRNA: 0.00001 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
