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Species belonging to selected taxon:
Zea mays
ABOUT THIS RECORD
ID:
MNEST054965
species:
Zea mays
miRNA family:
MIR166
source:
PMRD, original name:
zma-miR166i
Taxonomy by NCBI:
Zea mays
Zea
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGGACCAGGCTTCATTCCC
miRNA*
GAATGTCGTCTGGCGCGAGA
mismatches:
2
bulges:
2
View larger
pre-miRNA
GGG
GAATGTCGTCTGGCGCGAGA
CCGTACCAGACGACGTGCTCTCTCGGTCGTCGGACGGTC
TCGGACCAGGCTTCATTCCC
C
dot-bracket secondary structure
(((
(((((..(((((((.(((((
((((.((.((((((...........))))))))))))))
)))).))))))..)))))))
)
SIMILARITIES
miRBase
zma-MIR166i
:
6e-42
PMRD
zma-miR166r
:
6e-42
microPC
miR166
:
0.000001
UniProt
no hits
RFAM
mir-166: 1e-40
Identical with:
zma-MIR166i
from miRBase (
MNEST042725
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Maher C, Timmermans M, Stein L, Ware D,
Proc IEEE CSB :718-723(2004).
,
"Identifying microRNAs in plant genomes"
[
2
] Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D,
PLoS Genet. 5:e1000716(2009).
,
"A genome-wide characterization of microRNA genes in maize"