ABOUT THIS RECORDspecies: Eucalyptus globulus
miRNA family: MIRf661
source: miRNEST
Taxonomy by NCBI:
Eucalyptus globulus Eucalyptus Myrtaceae Myrtales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGCCAAAGGAGAGTTGCCCT miRNA* GGCTTCTCTACTTTGGCAACA mismatches: 3 bulges: 0 |
pre-miRNA
ACACTGAGCAAACCAGTTTTAGGGCTTCTCTACTTTGGCAACACATGTCAATGATGACGACGACGGAGAAGTCGAACGGATGCCGTCCAGTCATCGACGA
CTTGCCAAAGGAGAGTTGCCCTTTGACTGCTTCTGCTTAAC
dot-bracket secondary structure
....((((((((.(((((..(((((..((((.(((((((((.....(((..(((((((...(((((....(((.....))).)))))..)))))))..))
)))))))))).))))..)))))..))))).)).))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACACTGAGCAAACCAGTTTTAGGGCTTCTCTACTTTGGCAACACATGTCAATGATGACGACGACGGAGAAGTCGAACGGATGCCGTCCAGTCATCGACGA
CTTGCCAAAGGAGAGTTGCCCTTTGACTGCTTCTGCTTAAC
dot-bracket secondary structure
....((((((((.(((((..(((((..((((.(((((((((.....(((..(((((((...(((((....(((.....))).)))))..)))))))..))
)))))))))).))))..)))))..))))).)).))))))..
SIMILARITIES| miRBase vvi-MIR399b: 0.0000000001 PMRD vvi-miR399b: 0.0000000001 microPC miR399: 5e-53 | UniProt no hits RFAM mir-399: 0.000002 | most similar mature miRNAs |
Identical with: miR399 from microPC (MNEST046063) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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