miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST000638
species: Festuca arundinacea
miRNA family: MIR1122
source: miRNEST

Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAGGTACATCCGTATCTAGAT

miRNA*
 CAAGATATGGATGTATCTAGT

mismatches: 1
bulges: 0
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pre-miRNA
 GTATGTACTCCCTCCGATCCAAATTAATTAACTCTAATTTGTCAAGATATGGATGTATCTAGTCAACAAACGTATCTAGGTACATCCGTATCTAGATAAA
GTGGAGTCAATTAATTTGGATCGGAGGGAGTAACAA

dot-bracket secondary structure
...((((((((((((((((((((((((((.((((((.((((((.((((((((((((((((((...((....))..)))))))))))))))))).))))))
.)))))).))))))))))))))))))))))).))).


SIMILARITIES
miRBase far-MIR1122: 0.0004

PMRD no hits

microPC miR1122: 0.00000000000003		UniProt no hits

RFAM MIR1122: 0.0000005		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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