ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: MIRf1434
source: miRNEST
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGCAGGCCGACAGCTGGAA miRNA* TCAGCTGAAAGCCTGAAATT mismatches: 3 bulges: 1 |
pre-miRNA
ACCGGCAAATTTTCAGCTGAAAGCCTGAAATTGATGCATCGCACAAGGCATTTCACAACTGGACATGTTTCTGATCACACAAAAACACGTCTCTGAACTT
CTGAAGTCTGAACAACTCAAAGCCTTTTACGGGAGTCCTATCTGGCTAAGCTTATCCAGTAACCTAACAATGATGATCCATTTGCAGGCCGACAGCTGGA
AGCTGGGTTC
dot-bracket secondary structure
.(((((....(((((((((...(((((((((.(((.(((((....(((.((((((.((..((((.(((((.((......)).))))).))))......))
.)))))).(((.....))).((((......(((...)))....))))..(((.....)))..))).....)))))))).)))).)))))...))))))))
))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
ACCGGCAAATTTTCAGCTGAAAGCCTGAAATTGATGCATCGCACAAGGCATTTCACAACTGGACATGTTTCTGATCACACAAAAACACGTCTCTGAACTT
CTGAAGTCTGAACAACTCAAAGCCTTTTACGGGAGTCCTATCTGGCTAAGCTTATCCAGTAACCTAACAATGATGATCCATTTGCAGGCCGACAGCTGGA
AGCTGGGTTC
dot-bracket secondary structure
.(((((....(((((((((...(((((((((.(((.(((((....(((.((((((.((..((((.(((((.((......)).))))).))))......))
.)))))).(((.....))).((((......(((...)))....))))..(((.....)))..))).....)))))))).)))).)))))...))))))))
))))))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
