ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGTAATACTCCCTCCGTCC miRNA* ACAGAGGGAGTATATAACTGGG mismatches: 2 bulges: 2 |
pre-miRNA
TTTGGATTTAGTAATACTCCCTCCGTCCCACGAAAATTGTCTGAAATTTGTGTAAATTCGGATGTATCTAGACACTAAATAGCATCTAGATACATCCAAA
TTTGGACAAACCTCAGACAATTTCCATAGGACAGAGGGAGTATATAACTGGG
dot-bracket secondary structure
.......(((((.((((((((((.((((.....(((((((((((..(((((.((((((.(((((((((((((..((....))..))))))))))))).))
)))).)))))..))))))))))).....)))).))))))))))...))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTGGATTTAGTAATACTCCCTCCGTCCCACGAAAATTGTCTGAAATTTGTGTAAATTCGGATGTATCTAGACACTAAATAGCATCTAGATACATCCAAA
TTTGGACAAACCTCAGACAATTTCCATAGGACAGAGGGAGTATATAACTGGG
dot-bracket secondary structure
.......(((((.((((((((((.((((.....(((((((((((..(((((.((((((.(((((((((((((..((....))..))))))))))))).))
)))).)))))..))))))))))).....)))).))))))))))...))))).
SIMILARITIES| miRBase no hits PMRD bsy-miR1122: 0.000002 microPC no hits | UniProt no hits RFAM MIR1122: 0.0001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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