ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTA miRNA* GGCAGTCACCTTGGCTAGC mismatches: 0 bulges: 2 |
pre-miRNA
CTTACCTCTGATAGCCAAGGATGACTTGCCTATGTCTTCTTCCTCCCTCAGATGCCTAATTAGCCTTGGAGGTGTGGGGTCTCATGGGCAGTCACCTTGG
CTAGCCTGAGTGG
dot-bracket secondary structure
.....(((...(((((((((.(((((.(((((((.((((..(((((....((.((.......)).)))))))...))))...))))))))))))))))))
)))....)))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTTACCTCTGATAGCCAAGGATGACTTGCCTATGTCTTCTTCCTCCCTCAGATGCCTAATTAGCCTTGGAGGTGTGGGGTCTCATGGGCAGTCACCTTGG
CTAGCCTGAGTGG
dot-bracket secondary structure
.....(((...(((((((((.(((((.(((((((.((((..(((((....((.((.......)).)))))))...))))...))))))))))))))))))
)))....)))...
SIMILARITIES| miRBase far-MIR169: 1e-59 PMRD zma-miR169d: 0.000000000001 microPC miR169: 4e-47 | UniProt no hits RFAM MIR169_5: 0.0000000004 | most similar mature miRNAs |
Identical with: miR169 from microPC (MNEST045660) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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