miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST000670
species: Festuca pratensis
miRNA family: MIR535
source: miRNEST

Taxonomy by NCBI:
Festuca pratensis Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAATGAGAGAGAGAACGG

miRNA*
 TCTCTCCCTCTTGTTTCT

mismatches: 5
bulges: 1
View larger
pre-miRNA
 AACACTCCTGTATCTCTCCCTCTTGTTTCTCTTCCTCCCCCGTTGCTTCTAATCCTTCCTCTTGCTGCTACTGGATATTAAAATTACTGGTAGGGATCTC
TTGAGGATAATCTTGTGGTGTTAATCAAGGTTCCTATCAGGTGGCAGCTTTTTCTTAGATCGGGGGAGATCATGGATGGGGTGCGCGGTTGCTGGCTTAG
AGTGTCAACTGCTGGGGAAGGGATGCGTGCTTGTCGGCGGGTGTCTGAGAGCTACCCTCAATCACCAATAAAGTACACACAGCTGGCCTGAGCAAGCATG
GCGAAGCATGGAAACGGCACCTATATCCTAGGCCACCTTCGTCTCGCTACCTACAAAAGCACTGAACGCCTCCTCTTCCAGATTAGCAATTAGTGGAGTG
CTATCAGAAATAACCAAGCTCAGCAAAGAACTGGCAGGAATCAAGTACATACAATAGACATGGGCTTGAAAGAGATGCACCAAGTAGTACCGAAGGTAAT
CAATTGAAAAATAATGACAATGAGAGAGAGAACGGCAGGAACCT

dot-bracket secondary structure
.....((((((.((((((.((((((((((((((.((((((((.....(((((...........(((((((((.(((......)))..((((((((((((.
.(((.((((.........))))..))))))))))))))))))))))))......))))).)))))))).((.((((.((((.((.((((.(((..(((((
(((....))).)))))..(((.((((.(((((((((((.((((..((((.......))))..))))...............))))))..))))).))))(
((((.((..((....(((.............))).))...)).))))).))).....)))))))...))))))...))))(((.((((.((....)).))
))))).)).....((..((.(((.......))))).))..((((((.(((.........))).))))))))))))(((.....))).((((...))))..
..(((....)))...))))).))).))))))...))))))....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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