miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor

ABOUT THIS RECORD

ID: MNEST000686
species: Festuca pratensis
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Festuca pratensis Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
GTACTCCCTCCGACCCATAAT

miRNA*
TATGGTACGGAGGGAGTAGCA

mismatches: 3
bulges: 0

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pre-miRNA
CATTAGAAAGTACTCCCTCCGACCCATAATAAGATGTCATTACAACCAATATACCCATATATTATATTATGGTACGGAGGGAGTAGCAGGTAAC

dot-bracket secondary structure
..........(((((((((((..((((((((.(((((.....................))))).))))))))..))))))))))).........

SIMILARITIES

miRBase osa-MIR1436: 0.00007

PMRD osa-miRf12035-akr: 0.00007

microPC no hits

UniProt no hits

RFAM MIR1122: 0.000005

most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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