ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGTCTTCCTCTTCCTCTTCCT miRNA* GGGGAAAGGGGGAAGTGTCT mismatches: 5 bulges: 1 |
pre-miRNA
ACTCACCATGCCGTCTTCCTCTTCCTCTTCCTCTTCTTCTTCTTGCTGCTGCTAATCCCCTCTCCTACGANAATCCCGAGAGATTTTTGCCGTCATTCCT
TCGGGTTTCGAAGGTGGGAAGACCCCTCCCTGGGATTCAATCTTGAGGTTTCGAGATCAAGGTGGGGGAAAGGGGGAAGTGTCTTGATTTGA
dot-bracket secondary structure
......((.((...(((((((((..((((((...((((..(((((..(((...((((((....(((.(((..(.((((((.((.............)).)
)))))).))).))).((((.......)))).)))))).........)))..)))))..)))).)))))).))))))))).))..))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
degradome data
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ACTCACCATGCCGTCTTCCTCTTCCTCTTCCTCTTCTTCTTCTTGCTGCTGCTAATCCCCTCTCCTACGANAATCCCGAGAGATTTTTGCCGTCATTCCT
TCGGGTTTCGAAGGTGGGAAGACCCCTCCCTGGGATTCAATCTTGAGGTTTCGAGATCAAGGTGGGGGAAAGGGGGAAGTGTCTTGATTTGA
dot-bracket secondary structure
......((.((...(((((((((..((((((...((((..(((((..(((...((((((....(((.(((..(.((((((.((.............)).)
)))))).))).))).((((.......)))).)))))).........)))..)))))..)))).)))))).))))))))).))..))......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
degradome data
download this record
