ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCTTCCTCTTCCTCCTCCT miRNA* GAGAAGGCATGGATGAAAAGGGC mismatches: 4 bulges: 2 |
pre-miRNA
ACTCTGCGTCCTCCTCTTCCTCTTCCTCCTCCTCCTCATCATCAATTCGCGTCCCTCGCACTCCAGACTATTACATAACTTCATAAGAATCATGGATAGG
GTAATGACGGGAGAAGGCATGGATGAAAAGGGCTGGCGTCGA
dot-bracket secondary structure
..((.(((((.((((.(((.(((.(((.(((((..((((.(((.....(((.....)))..((((...........................))))...)
)).)))).))))).)))...))).))).))))..))))).))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ACTCTGCGTCCTCCTCTTCCTCTTCCTCCTCCTCCTCATCATCAATTCGCGTCCCTCGCACTCCAGACTATTACATAACTTCATAAGAATCATGGATAGG
GTAATGACGGGAGAAGGCATGGATGAAAAGGGCTGGCGTCGA
dot-bracket secondary structure
..((.(((((.((((.(((.(((.(((.(((((..((((.(((.....(((.....)))..((((...........................))))...)
)).)))).))))).)))...))).))).))))..))))).))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
