ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1065
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACAGTCTCTGACTTCTCGCAN miRNA* GCGGGAAATCAGAGACAGTCG mismatches: 3 bulges: 0 |
pre-miRNA
GTACTGATTCCGAAGGAGAAGACAGTCTCTGACTTCTCGCANAGTGAGCCTGTTTCTGCAGTACTGGAACGATTGGTTGAGACCACTGGCACTAGGCAAA
AACCTTGTTTCTGGTGACTTGGTCTGGGATCGTACAGAGCTGCAGAACGCTTGACATGCGGGAAATCAGAGACAGTCGCTTCCTTTGGTTTCTAAT
dot-bracket secondary structure
.....((..(((((((((..(((.((((((((.((((((((..((((((....(((((((((.(((..((((((...(.((((((..((((((((((((.
....))))..)))))).)))))))).))))))).))).))))))))).)))).)).)))))))).)))))))).)))..)))))))))..))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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GTACTGATTCCGAAGGAGAAGACAGTCTCTGACTTCTCGCANAGTGAGCCTGTTTCTGCAGTACTGGAACGATTGGTTGAGACCACTGGCACTAGGCAAA
AACCTTGTTTCTGGTGACTTGGTCTGGGATCGTACAGAGCTGCAGAACGCTTGACATGCGGGAAATCAGAGACAGTCGCTTCCTTTGGTTTCTAAT
dot-bracket secondary structure
.....((..(((((((((..(((.((((((((.((((((((..((((((....(((((((((.(((..((((((...(.((((((..((((((((((((.
....))))..)))))).)))))))).))))))).))).))))))))).)))).)).)))))))).)))))))).)))..)))))))))..))....
SIMILARITIES| miRBase ppt-MIR1065: 4e-107 PMRD ppt-miR1065: 4e-107 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
Source sequences
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