ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR1171
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGGAGTGGAGTGGAGTGGAGT miRNA* GCCTTTTTATTCTGCCTCTT mismatches: 4 bulges: 1 |
pre-miRNA
AGGCCTTGTTACTGTCGAAGCCTTCGAATAGGCGCCTTTTTATTCTGCCTCTTATCGGTTGCTTTCTTTCAAACAGGCCGCCCGGTTTGTTTGTGCATCT
GGCGTCGGTGATAGGATCAGGCCGGTGAAGTGTGCACGAAGTGTCTGTGAAAGAGACTTTGCGGGAGTGGAGTGGAGTGGAGTGAAGCCGGGGAGGCGTT
CGGCGTTCGCGGC
dot-bracket secondary structure
..(((.((..((.((((((((((((.....(((.((.((((((((((((((.((..((((.(((((...((.(((((((....))))..(((((((((((
..((((((((((...)))..))))))).)).))))))))).))).)).))))).)))).)).))).))))))))))).))......)))..)))))).))
)))))).)).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AGGCCTTGTTACTGTCGAAGCCTTCGAATAGGCGCCTTTTTATTCTGCCTCTTATCGGTTGCTTTCTTTCAAACAGGCCGCCCGGTTTGTTTGTGCATCT
GGCGTCGGTGATAGGATCAGGCCGGTGAAGTGTGCACGAAGTGTCTGTGAAAGAGACTTTGCGGGAGTGGAGTGGAGTGGAGTGAAGCCGGGGAGGCGTT
CGGCGTTCGCGGC
dot-bracket secondary structure
..(((.((..((.((((((((((((.....(((.((.((((((((((((((.((..((((.(((((...((.(((((((....))))..(((((((((((
..((((((((((...)))..))))))).)).))))))))).))).)).))))).)))).)).))).))))))))))).))......)))..)))))).))
)))))).)).)))
SIMILARITIES| miRBase cre-MIR1171: 0.00004 PMRD cre-miR1171: 0.00004 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
