ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR2083
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGATTGACGAGTGCAAGAAGA miRNA* TTCTTGCACTCCTCCATCTCT mismatches: 3 bulges: 0 |
pre-miRNA
TTCGCAGTCGTACTTCTTGCACTCCTCCATCTCTCGCATCTCTTGCGCATTGTGGTTCCCCAACACCTGCACAGCGGCGGTCATGTCCGGATTAGGGATC
GTCTACACCAGATAAGCCACGGCGTTTTTCTCGGAGAAAAATACCATCCTTTGGTTCAACAACGGTTGCTGCGTTTTCCACGTTCGGATACAACCCTGCC
CAGTTGCTGTGAGAGATTGACGAGTGCAAGAAGACCCTCTTCCC
dot-bracket secondary structure
...((....)).((((((((((((.((.((((((((((...((((((.....(((....))).....))))..((((.(((..(((((((((...(((.(
((....((((((........((.((((((((...)))))))).))....)))))).((((....))))..)))...)))..)))))))))..))))))).
.))....)))))))))).)).))))))))))))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
TTCGCAGTCGTACTTCTTGCACTCCTCCATCTCTCGCATCTCTTGCGCATTGTGGTTCCCCAACACCTGCACAGCGGCGGTCATGTCCGGATTAGGGATC
GTCTACACCAGATAAGCCACGGCGTTTTTCTCGGAGAAAAATACCATCCTTTGGTTCAACAACGGTTGCTGCGTTTTCCACGTTCGGATACAACCCTGCC
CAGTTGCTGTGAGAGATTGACGAGTGCAAGAAGACCCTCTTCCC
dot-bracket secondary structure
...((....)).((((((((((((.((.((((((((((...((((((.....(((....))).....))))..((((.(((..(((((((((...(((.(
((....((((((........((.((((((((...)))))))).))....)))))).((((....))))..)))...)))..)))))))))..))))))).
.))....)))))))))).)).))))))))))))...........
SIMILARITIES| miRBase ppt-MIR2083: 6e-131 PMRD ppt-miR899: 3e-65 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
