ABOUT THIS RECORDspecies: Fragaria vesca
miRNA family: MIR2025
source: miRNEST
Taxonomy by NCBI:
Fragaria vesca Fragaria Potentilleae Rosodae Rosoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGTTCTCAGGTCGCCCCTGC miRNA* GGAGCGACCTGAGACCACAT mismatches: 3 bulges: 0 |
pre-miRNA
AGCCAGCCACAAAGGGTAGAGGAGTCCCTGAGGAGCGACCTGAGACCACATGTGTGCACCCTCACCACACTCCAAAGTGAGAGTACATAACCACGTGTTC
TCAGGTCGCCCCTGCGAGACTTTCCGTTTACCACATAACCGCG
dot-bracket secondary structure
.....((.......((((((((((((..(((((.(((((((((((.(((.((((((.((.(((((...........))))).)).))))..)).))).))
))))))))).))).)).)))..))).))))))........)).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGCCAGCCACAAAGGGTAGAGGAGTCCCTGAGGAGCGACCTGAGACCACATGTGTGCACCCTCACCACACTCCAAAGTGAGAGTACATAACCACGTGTTC
TCAGGTCGCCCCTGCGAGACTTTCCGTTTACCACATAACCGCG
dot-bracket secondary structure
.....((.......((((((((((((..(((((.(((((((((((.(((.((((((.((.(((((...........))))).)).))))..)).))).))
))))))))).))).)).)))..))).))))))........)).
SIMILARITIES| miRBase osa-MIR398b: 0.0001 PMRD vvi-miR398c: 0.0001 microPC miR398: 3e-42 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR398 from microPC (MNEST045087) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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