ABOUT THIS RECORDspecies: Alvinella pompejana
miRNA family: mir-467
source: miRNEST
Taxonomy by NCBI:
Alvinella pompejana Alvinella Alvinellidae Terebellida Scolecida Polychaeta Annelida Annelida/Echiura/Pogonophora group Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATACATAAACACACATATAA miRNA* ATATGTCTGTTAAATGATTTG mismatches: 3 bulges: 2 |
pre-miRNA
ACTGAGCAAATGGAATCATTTTATATGTCTGTTAAATGATTTGATACAGATTTACTACGCACTTTTATATTCTGTGAAGTACCAATCATTTGTGTCACAG
ATGAGTCTTTGGAGGTATTTATATACATAAACACACATATAAACAAATTCTATGCCTTGAT
dot-bracket secondary structure
...(((...(((((((...(((((((((.((((..(((((..(((((.....((((.((((...........)))).))))((((((((((((...))))
))))....))))..)))))...)).))).)))).)))))))))...)))))))..)))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ACTGAGCAAATGGAATCATTTTATATGTCTGTTAAATGATTTGATACAGATTTACTACGCACTTTTATATTCTGTGAAGTACCAATCATTTGTGTCACAG
ATGAGTCTTTGGAGGTATTTATATACATAAACACACATATAAACAAATTCTATGCCTTGAT
dot-bracket secondary structure
...(((...(((((((...(((((((((.((((..(((((..(((((.....((((.((((...........)))).))))((((((((((((...))))
))))....))))..)))))...)).))).)))).)))))))))...)))))))..)))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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