ABOUT THIS RECORDspecies: Alvinella pompejana
miRNA family: mir-466
source: miRNEST
Taxonomy by NCBI:
Alvinella pompejana Alvinella Alvinellidae Terebellida Scolecida Polychaeta Annelida Annelida/Echiura/Pogonophora group Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTGTGCGTATATGTATAT miRNA* TACGTTTATCTACATACACC mismatches: 2 bulges: 1 |
pre-miRNA
CCATGACATTACGTTTATCTACATACACCCACTGACAACCCATACGCTTTTAAATCTATAAACACGTATTTATACAGATTTGAATTTTGATCAAATGAAA
GGCCTCAGCTTAGAAAGCTTAACCACCCGGATGCATGTGTGTGCGTATATGTATATGTATAATAAA
dot-bracket secondary structure
.....(((((((((.(((.((((((((..(((((.((...........((((((((((((((......)))))..)))))))))...........))...
((....(((((...)))))...))...))).))..)))))))).))).))))).))))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CCATGACATTACGTTTATCTACATACACCCACTGACAACCCATACGCTTTTAAATCTATAAACACGTATTTATACAGATTTGAATTTTGATCAAATGAAA
GGCCTCAGCTTAGAAAGCTTAACCACCCGGATGCATGTGTGTGCGTATATGTATATGTATAATAAA
dot-bracket secondary structure
.....(((((((((.(((.((((((((..(((((.((...........((((((((((((((......)))))..)))))))))...........))...
((....(((((...)))))...))...))).))..)))))))).))).))))).))))........
SIMILARITIES| miRBase mmu-mir-466b-1: 0.0005 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
