ABOUT THIS RECORDspecies: Alvinella pompejana
miRNA family: miR-4116
source: miRNEST
Taxonomy by NCBI:
Alvinella pompejana Alvinella Alvinellidae Terebellida Scolecida Polychaeta Annelida Annelida/Echiura/Pogonophora group Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGGGAAAGATGGGATTTATTT miRNA* ATGCTTCCGTCGTCTCCCA mismatches: 2 bulges: 2 |
pre-miRNA
TTTTTTTCGGGGAAAGATGGGATTTATTTCGATATTAGGAGGTGGAAGTGGATCATCAAAGTGCCATTATCGAGGTGCTTTATTATGGGATTAAATAGGT
CAGAGGTGGGATCTTAATGCCACTTTCTCATGAGCAGATGCTTCCGTCGTCTCCCATCAGA
dot-bracket secondary structure
........(((((..(((((((..(((((...(((.(((((((((....(((((...((((((((........)))))))).((((..((((.....)))
)....))))))))).....))))))))).)))...))))).))))))).))))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TTTTTTTCGGGGAAAGATGGGATTTATTTCGATATTAGGAGGTGGAAGTGGATCATCAAAGTGCCATTATCGAGGTGCTTTATTATGGGATTAAATAGGT
CAGAGGTGGGATCTTAATGCCACTTTCTCATGAGCAGATGCTTCCGTCGTCTCCCATCAGA
dot-bracket secondary structure
........(((((..(((((((..(((((...(((.(((((((((....(((((...((((((((........)))))))).((((..((((.....)))
)....))))))))).....))))))))).)))...))))).))))))).))))).......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
