miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000754
species: Gossypium hirsutum
miRNA family: MIR2673
source: miRNEST

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCTCTTCCTCTTCCTCTCCAC

miRNA*
 GGGGGGGGGAGAAGAAAGAGAG

mismatches: 2
bulges: 2
View larger
pre-miRNA
 CATCCTCCTCTTCCTCTTCCTCTCCACCAACAACACCGCTACTTCCGCTACCGACGATAAATCCTCGAGATCTACGCCGACTCGTTCACAGGACAATCGA
TCCGATTCCGCTCCACCTACAACAGCTGCAACAACGGCAACAGCAACGACGAATAGTCCGATGACCGCTTCAAATCGGTCTGGATACGATACCGCGGAAA
AGAAGTCGGTGAATCGATGTTCTGGTTGCAGAAAACGCGTTGGGTTGACCGGGTTCCGGTGTCGATGCGGGGAGCTTTTCAAAAAAATATTTTTTTAGGG
GGGGGGGGGAGAAGAAAGAGAGGAT

dot-bracket secondary structure
.((((((.(((((.(((((((((((.((.........(((...(((((...(((.((....)).)))..(((.(((((((((((.(((..(((..((((.
..)))))))..((((..........(((((((..(((.((((.((.((((......((((..(((((........))))).((........)).))))..
....)))).))......)))))))))))))).........)))).))).)))))..)))))).)))))))).))).....((((((....)))))).)).
.))))))))))).).))))))))))


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q9LHJ8|SAP5_ARATH: 0.00000003

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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