ABOUT THIS RECORDspecies: Litopenaeus vannamei
miRNA family: miR-4020a
source: miRNEST
Taxonomy by NCBI:
Litopenaeus vannamei Litopenaeus Penaeidae Penaeoidea Dendrobranchiata Decapoda Eucarida Eumalacostraca Malacostraca Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGGCTAAGTTGGTGCCAGT miRNA* TGACAGCAAATTAGACACACT mismatches: 4 bulges: 0 |
pre-miRNA
TCGGTTCTTCCTGTGGCTAAGTTGGTGCCAGTTTTTTCTGGTTTAATTCATGCAGCTCTCTCCCCTGCTCCAGGACAACTTCTTCAGAAGATTCTTATTG
ACAGCAAATTAGACACACTTGGAGCAA
dot-bracket secondary structure
...(((((...((((.((((.(((.((.((((.((((((((......((.((.(((..........))).)).))........)))))))).....))))
.)).))).)))).))))...)))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TCGGTTCTTCCTGTGGCTAAGTTGGTGCCAGTTTTTTCTGGTTTAATTCATGCAGCTCTCTCCCCTGCTCCAGGACAACTTCTTCAGAAGATTCTTATTG
ACAGCAAATTAGACACACTTGGAGCAA
dot-bracket secondary structure
...(((((...((((.((((.(((.((.((((.((((((((......((.((.(((..........))).)).))........)))))))).....))))
.)).))).)))).))))...)))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
