ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR1510
source: miRNEST
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGAGGATTAGGTAAAACAAC miRNA* TGTCTTACCCATTCCTCCCAT mismatches: 5 bulges: 0 |
pre-miRNA
AGAAAGTTGCTATTGCAATAGTTGTCTTACCCATTCCTCCCATCCCATAAATCTATTATATGTACTCCATCATCATATGGATCCACTCTTGTGTTATGAT
AATAGAGTCGCATGATAGGAATCTTGGATCGGAGGATTAGGTAAAACAACTATTGCATTACGCTTTATA
dot-bracket secondary structure
..(((((...((.((((((((((((.(((((...((((((.((((......((((((((.((.((((.((.((((((.(((.....))).....))))))
.)).)))))).))))))))......)))).))))))...))))).)))))))))))).)).)))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGAAAGTTGCTATTGCAATAGTTGTCTTACCCATTCCTCCCATCCCATAAATCTATTATATGTACTCCATCATCATATGGATCCACTCTTGTGTTATGAT
AATAGAGTCGCATGATAGGAATCTTGGATCGGAGGATTAGGTAAAACAACTATTGCATTACGCTTTATA
dot-bracket secondary structure
..(((((...((.((((((((((((.(((((...((((((.((((......((((((((.((.((((.((.((((((.(((.....))).....))))))
.)).)))))).))))))))......)))).))))))...))))).)))))))))))).)).)))))...
SIMILARITIES| miRBase mtr-MIR1510a: 9e-83 PMRD mtr-miR1510a: 9e-83 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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